Classes
class	HydroGelThreeFields< dim, spacedim, LAC >

class	NavierStokes< dim, spacedim, LAC >
	This interface solves a Navier Stokes Equation: \[ \begin{cases} \partial_t u + (u\cdot\nabla)u - \nu\textrm{div} \epsilon(u) + \frac{1}{\rho}\nabla p = f \\ \textrm{div}u=0 \end{cases} \] where \( \epsilon(u) = \frac{\nabla u + [\nabla u]^t}{2}. \). More...

class	NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >

class	CompressibleNeoHookeanInterface< dim, spacedim, LAC >

class	FreeSwellingThreeFields< dim, spacedim >

class	HeatEquation< dim, LAC >

class	ALENavierStokes< dim >

Typedefs
typedef LADealII	LAC

Functions
	HydroGelThreeFields< dim, spacedim, LAC >::HydroGelThreeFields ()

void	HydroGelThreeFields< dim, spacedim, LAC >::set_matrix_couplings (std::vector< std::string > &couplings) const

template<typename EnergyType , typename ResidualType >
void	HydroGelThreeFields< dim, spacedim, LAC >::energies_and_residuals (const typename DoFHandler< dim, spacedim >::active_cell_iterator &cell, FEValuesCache< dim, spacedim > &scratch, std::vector< EnergyType > &energies, std::vector< std::vector< ResidualType > > &local_residuals, bool compute_only_system_terms) const

void	HydroGelThreeFields< dim, spacedim, LAC >::declare_parameters (ParameterHandler &prm)

void	HydroGelThreeFields< dim, spacedim, LAC >::parse_parameters_call_back ()

void	HydroGelThreeFields< dim, spacedim, LAC >::compute_system_operators (const DoFHandler< dim, spacedim > &, const std::vector< shared_ptr< LATrilinos::BlockMatrix > >, LinearOperator< LATrilinos::VectorType > &, LinearOperator< LATrilinos::VectorType > &) const

	NavierStokes< dim, spacedim, LAC >::NavierStokes (bool dynamic, bool convection)

void	NavierStokes< dim, spacedim, LAC >::declare_parameters (ParameterHandler &prm)

void	NavierStokes< dim, spacedim, LAC >::parse_parameters_call_back ()

void	NavierStokes< dim, spacedim, LAC >::set_matrix_couplings (std::vector< std::string > &couplings) const

template<typename EnergyType , typename ResidualType >
void	NavierStokes< dim, spacedim, LAC >::energies_and_residuals (const typename DoFHandler< dim, spacedim >::active_cell_iterator &cell, FEValuesCache< dim, spacedim > &fe_cache, std::vector< EnergyType > &, std::vector< std::vector< ResidualType > > &residual, bool compute_only_system_terms) const

void	NavierStokes< dim, spacedim, LAC >::compute_system_operators (const DoFHandler< dim, spacedim > &, const std::vector< shared_ptr< LATrilinos::BlockMatrix >>, LinearOperator< LATrilinos::VectorType > &, LinearOperator< LATrilinos::VectorType > &) const

	NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >::NeoHookeanTwoFieldsInterface ()

template<typename EnergyType , typename ResidualType >
void	NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >::energies_and_residuals (const typename DoFHandler< dim, spacedim >::active_cell_iterator &cell, FEValuesCache< dim, spacedim > &scratch, std::vector< EnergyType > &energies, std::vector< std::vector< ResidualType > > &local_residuals, bool compute_only_system_terms) const

virtual void	NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >::declare_parameters (ParameterHandler &prm)

void	NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >::set_matrix_couplings (std::vector< std::string > &couplings) const

void	NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >::compute_system_operators (const DoFHandler< dim, spacedim > &, const std::vector< shared_ptr< LATrilinos::BlockMatrix > >, LinearOperator< LATrilinos::VectorType > &, LinearOperator< LATrilinos::VectorType > &) const

	CompressibleNeoHookeanInterface< dim, spacedim, LAC >::CompressibleNeoHookeanInterface ()

template<typename Number >
void	CompressibleNeoHookeanInterface< dim, spacedim, LAC >::preconditioner_energy (const typename DoFHandler< dim, spacedim >::active_cell_iterator &, Scratch &, CopyPreconditioner &, Number &energy) const

template<typename Number >
void	CompressibleNeoHookeanInterface< dim, spacedim, LAC >::system_energy (const typename DoFHandler< dim, spacedim >::active_cell_iterator &, Scratch &, CopySystem &, Number &energy) const

void	CompressibleNeoHookeanInterface< dim, spacedim, LAC >::declare_parameters (ParameterHandler &prm)

void	CompressibleNeoHookeanInterface< dim, spacedim, LAC >::parse_parameters_call_back ()

void	CompressibleNeoHookeanInterface< dim, spacedim, LAC >::compute_system_operators (const DoFHandler< dim, spacedim > &, const TrilinosWrappers::BlockSparseMatrix &, const TrilinosWrappers::BlockSparseMatrix &, const std::vector< shared_ptr< MAT > >, LinearOperator< VEC > &, LinearOperator< VEC > &) const

	FreeSwellingThreeFields< dim, spacedim >::FreeSwellingThreeFields ()

template<typename Number >
void	FreeSwellingThreeFields< dim, spacedim >::preconditioner_energy (const typename DoFHandler< dim, spacedim >::active_cell_iterator &, Scratch &, CopyPreconditioner &, Number &energy) const

template<typename Number >
void	FreeSwellingThreeFields< dim, spacedim >::system_energy (const typename DoFHandler< dim, spacedim >::active_cell_iterator &, Scratch &, CopySystem &, Number &energy) const

void	FreeSwellingThreeFields< dim, spacedim >::declare_parameters (ParameterHandler &prm)

void	FreeSwellingThreeFields< dim, spacedim >::parse_parameters_call_back ()

template<typename Number >
void	NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >::preconditioner_energy (const typename DoFHandler< dim, spacedim >::active_cell_iterator &, Scratch &, CopyPreconditioner &, Number &energy) const

template<typename Number >
void	NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >::system_energy (const typename DoFHandler< dim, spacedim >::active_cell_iterator &, Scratch &, CopySystem &, Number &energy) const

virtual void	NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >::parse_parameters_call_back ()

virtual void	NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >::compute_system_operators (const DoFHandler< dim, spacedim > &, const TrilinosWrappers::BlockSparseMatrix &, const TrilinosWrappers::BlockSparseMatrix &, const std::vector< shared_ptr< MAT > >, BlockLinearOperator< VEC > &, BlockLinearOperator< VEC > &) const

	ALENavierStokes< dim >::ALENavierStokes ()

template<typename Number >
void	ALENavierStokes< dim >::preconditioner_residual (const typename DoFHandler< dim >::active_cell_iterator &, Scratch &, CopyPreconditioner &, std::vector< Number > &local_residual) const

template<typename Number >
void	ALENavierStokes< dim >::system_residual (const typename DoFHandler< dim >::active_cell_iterator &, Scratch &, CopySystem &, std::vector< Number > &local_residual) const

void	ALENavierStokes< dim >::declare_parameters (ParameterHandler &prm)

void	ALENavierStokes< dim >::parse_parameters_call_back ()

virtual void	ALENavierStokes< dim >::compute_system_operators (const DoFHandler< dim > &, const TrilinosWrappers::BlockSparseMatrix &, const TrilinosWrappers::BlockSparseMatrix &, const std::vector< shared_ptr< MAT > >, LinearOperator< VEC > &, LinearOperator< VEC > &) const

Detailed Description

Typedef Documentation

typedef LADealII LAC

Function Documentation

template<int dim>

ALENavierStokes< dim >::ALENavierStokes ( )

template<int dim, int spacedim>

CompressibleNeoHookeanInterface< dim, spacedim >::CompressibleNeoHookeanInterface ( )

template<int dim, int spacedim, typename LAC >

void NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >::compute_system_operators	(	const DoFHandler< dim, spacedim > &	dh,
		const std::vector< shared_ptr< LATrilinos::BlockMatrix > >	matrices,
		LinearOperator< LATrilinos::VectorType > &	system_op,
		LinearOperator< LATrilinos::VectorType > &	prec_op
	)		const

template<int dim, int spacedim, typename LAC >

void HydroGelThreeFields< dim, spacedim, LAC >::compute_system_operators	(	const DoFHandler< dim, spacedim > &	dh,
		const std::vector< shared_ptr< LATrilinos::BlockMatrix > >	matrices,
		LinearOperator< LATrilinos::VectorType > &	system_op,
		LinearOperator< LATrilinos::VectorType > &	prec_op
	)		const

template<int dim, int spacedim>

void NeoHookeanTwoFieldsInterface< dim, spacedim >::compute_system_operators	(	const DoFHandler< dim, spacedim > &	dh,
		const TrilinosWrappers::BlockSparseMatrix &	matrix,
		const TrilinosWrappers::BlockSparseMatrix &	preconditioner_matrix,
		const std::vector< shared_ptr< MAT > >	,
		BlockLinearOperator< VEC > &	system_op,
		BlockLinearOperator< VEC > &	prec_op
	)		const

virtual

template<int dim>

void ALENavierStokes< dim >::compute_system_operators	(	const DoFHandler< dim > &	dh,
		const TrilinosWrappers::BlockSparseMatrix &	matrix,
		const TrilinosWrappers::BlockSparseMatrix &	preconditioner_matrix,
		const std::vector< shared_ptr< MAT > >	,
		LinearOperator< VEC > &	system_op,
		LinearOperator< VEC > &	prec_op
	)		const

virtual

template<int dim, int spacedim>

void CompressibleNeoHookeanInterface< dim, spacedim >::compute_system_operators	(	const DoFHandler< dim, spacedim > &	dh,
		const TrilinosWrappers::BlockSparseMatrix &	matrix,
		const TrilinosWrappers::BlockSparseMatrix &	preconditioner_matrix,
		const std::vector< shared_ptr< MAT > >	,
		LinearOperator< VEC > &	system_op,
		LinearOperator< VEC > &	prec_op
	)		const

template<int dim, int spacedim, typename LAC >

void NavierStokes< dim, spacedim, LAC >::compute_system_operators	(	const DoFHandler< dim, spacedim > &	dh,
		const std::vector< shared_ptr< LATrilinos::BlockMatrix >>	matrices,
		LinearOperator< LATrilinos::VectorType > &	system_op,
		LinearOperator< LATrilinos::VectorType > &	prec_op
	)		const

template<int dim, int spacedim>

void CompressibleNeoHookeanInterface< dim, spacedim >::declare_parameters ( ParameterHandler & prm )

virtual

Reimplemented from ConservativeInterface< dim, spacedim, dim, CompressibleNeoHookeanInterface< dim, spacedim > >.

template<int dim, int spacedim>

void NeoHookeanTwoFieldsInterface< dim, spacedim >::declare_parameters ( ParameterHandler & prm )

virtual

Reimplemented from ConservativeInterface< dim, spacedim, dim+1, NeoHookeanTwoFieldsInterface< dim, spacedim > >.

template<int dim, int spacedim, typename LAC >

void HydroGelThreeFields< dim, spacedim, LAC >::declare_parameters ( ParameterHandler & prm )

virtual

Reimplemented from PDESystemInterface< dim, spacedim, HydroGelThreeFields< dim, spacedim, LAC >, LAC >.

template<int dim>

void ALENavierStokes< dim >::declare_parameters ( ParameterHandler & prm )

virtual

Reimplemented from NonConservativeInterface< dim, dim, dim+dim+1, ALENavierStokes< dim > >.

template<int dim, int spacedim>

void FreeSwellingThreeFields< dim, spacedim >::declare_parameters ( ParameterHandler & prm )

virtual

Reimplemented from ConservativeInterface< dim, spacedim, dim+2, FreeSwellingThreeFields< dim, spacedim >, LAC >.

template<int dim, int spacedim, typename LAC >

void NavierStokes< dim, spacedim, LAC >::declare_parameters ( ParameterHandler & prm )

virtual

Reimplemented from PDESystemInterface< dim, spacedim, NavierStokes< dim, spacedim, LAC >, LAC >.

template<int dim, int spacedim, typename LAC >

template<typename EnergyType , typename ResidualType >

void NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >::energies_and_residuals	(	const typename DoFHandler< dim, spacedim >::active_cell_iterator &	cell,
		FEValuesCache< dim, spacedim > &	scratch,
		std::vector< EnergyType > &	energies,
		std::vector< std::vector< ResidualType > > &	local_residuals,
		bool	compute_only_system_terms
	)		const

template<int dim, int spacedim, typename LAC >

template<typename EnergyType , typename ResidualType >

void HydroGelThreeFields< dim, spacedim, LAC >::energies_and_residuals	(	const typename DoFHandler< dim, spacedim >::active_cell_iterator &	cell,
		FEValuesCache< dim, spacedim > &	scratch,
		std::vector< EnergyType > &	energies,
		std::vector< std::vector< ResidualType > > &	local_residuals,
		bool	compute_only_system_terms
	)		const

template<int dim, int spacedim = dim, typename LAC = LATrilinos>

template<typename EnergyType , typename ResidualType >

void NavierStokes< dim, spacedim, LAC >::energies_and_residuals	(	const typename DoFHandler< dim, spacedim >::active_cell_iterator &	cell,
		FEValuesCache< dim, spacedim > &	fe_cache,
		std::vector< EnergyType > &	,
		std::vector< std::vector< ResidualType > > &	residual,
		bool	compute_only_system_terms
	)		const

template<int dim, int spacedim>

FreeSwellingThreeFields< dim, spacedim >::FreeSwellingThreeFields ( )

template<int dim, int spacedim, typename LAC >

HydroGelThreeFields< dim, spacedim, LAC >::HydroGelThreeFields ( )

template<int dim, int spacedim, typename LAC >

NavierStokes< dim, spacedim, LAC >::NavierStokes	(	bool	dynamic,
		bool	convection
	)

template<int dim, int spacedim>

NeoHookeanTwoFieldsInterface< dim, spacedim >::NeoHookeanTwoFieldsInterface ( )

template<int dim, int spacedim>

void CompressibleNeoHookeanInterface< dim, spacedim >::parse_parameters_call_back ( )

virtual

Reimplemented from ConservativeInterface< dim, spacedim, dim, CompressibleNeoHookeanInterface< dim, spacedim > >.

template<int dim, int spacedim, typename LAC >

void HydroGelThreeFields< dim, spacedim, LAC >::parse_parameters_call_back ( )

template<int dim, int spacedim>

void NeoHookeanTwoFieldsInterface< dim, spacedim >::parse_parameters_call_back ( )

virtual

Reimplemented from ConservativeInterface< dim, spacedim, dim+1, NeoHookeanTwoFieldsInterface< dim, spacedim > >.

template<int dim>

void ALENavierStokes< dim >::parse_parameters_call_back ( )

virtual

Reimplemented from NonConservativeInterface< dim, dim, dim+dim+1, ALENavierStokes< dim > >.

template<int dim, int spacedim>

void FreeSwellingThreeFields< dim, spacedim >::parse_parameters_call_back ( )

virtual

Reimplemented from ConservativeInterface< dim, spacedim, dim+2, FreeSwellingThreeFields< dim, spacedim >, LAC >.

template<int dim, int spacedim, typename LAC >

void NavierStokes< dim, spacedim, LAC >::parse_parameters_call_back ( )

template<int dim, int spacedim>

template<typename Number >

void NeoHookeanTwoFieldsInterface< dim, spacedim >::preconditioner_energy	(	const typename DoFHandler< dim, spacedim >::active_cell_iterator &	cell,
		Scratch &	fe_cache,
		CopyPreconditioner &	data,
		Number &	energy
	)		const

template<int dim, int spacedim>

template<typename Number >

void CompressibleNeoHookeanInterface< dim, spacedim >::preconditioner_energy	(	const typename DoFHandler< dim, spacedim >::active_cell_iterator &	cell,
		Scratch &	fe_cache,
		CopyPreconditioner &	data,
		Number &	energy
	)		const

template<int dim, int spacedim>

template<typename Number >

void FreeSwellingThreeFields< dim, spacedim >::preconditioner_energy	(	const typename DoFHandler< dim, spacedim >::active_cell_iterator &	cell,
		Scratch &	fe_cache,
		CopyPreconditioner &	data,
		Number &	energy
	)		const

template<int dim>

template<typename Number >

void ALENavierStokes< dim >::preconditioner_residual	(	const typename DoFHandler< dim >::active_cell_iterator &	cell,
		Scratch &	fe_cache,
		CopyPreconditioner &	data,
		std::vector< Number > &	local_residual
	)		const

template<int dim, int spacedim, typename LAC >

void NeoHookeanTwoFieldsInterface< dim, spacedim, LAC >::set_matrix_couplings ( std::vector< std::string > & couplings ) const

template<int dim, int spacedim, typename LAC >

void HydroGelThreeFields< dim, spacedim, LAC >::set_matrix_couplings ( std::vector< std::string > & couplings ) const

template<int dim, int spacedim, typename LAC >

void NavierStokes< dim, spacedim, LAC >::set_matrix_couplings ( std::vector< std::string > & couplings ) const

template<int dim, int spacedim>

template<typename Number >

void NeoHookeanTwoFieldsInterface< dim, spacedim >::system_energy	(	const typename DoFHandler< dim, spacedim >::active_cell_iterator &	cell,
		Scratch &	fe_cache,
		CopySystem &	data,
		Number &	energy
	)		const

template<int dim, int spacedim>

template<typename Number >

void CompressibleNeoHookeanInterface< dim, spacedim >::system_energy	(	const typename DoFHandler< dim, spacedim >::active_cell_iterator &	cell,
		Scratch &	fe_cache,
		CopySystem &	data,
		Number &	energy
	)		const

template<int dim, int spacedim>

template<typename Number >

void FreeSwellingThreeFields< dim, spacedim >::system_energy	(	const typename DoFHandler< dim, spacedim >::active_cell_iterator &	cell,
		Scratch &	fe_cache,
		CopySystem &	data,
		Number &	energy
	)		const

template<int dim>

template<typename Number >

void ALENavierStokes< dim >::system_residual	(	const typename DoFHandler< dim >::active_cell_iterator &	cell,
		Scratch &	fe_cache,
		CopySystem &	data,
		std::vector< Number > &	local_residual
	)		const

Classes

Typedefs

Functions

Detailed Description

Typedef Documentation

Function Documentation